Molecular Phylogeny of a Rodent from Melghat Tiger Reserve in Central India: A Probable New Species or New Genus
PDF

Supplementary Files

Supplementary data
PDF

Keywords

Rodents
Millardia
Cytochrome b
IRBP
Melghat Tiger Reserve.

How to Cite

Atkulwar, A., Farah, S., Talmale, S., & Baig, M. (2020). Molecular Phylogeny of a Rodent from Melghat Tiger Reserve in Central India: A Probable New Species or New Genus. Journal of the Bombay Natural History Society (JBNHS), 117, 39–44. https://doi.org/10.17087/jbnhs/2020/v117/143831

Abstract

Rodents constitute 40% of mammals inhabiting earth and are found in all continents except Antarctica. The phylogeny of rodents is obscure and there is a lack of resolution owing to unavailability of morphological and genetic data. This study concerns the phylogeny of a road-kill rodent discovered from the Melghat Tiger Reserve (MTR) in Amravati, Central India. Due to small sample size, limited morphological data was generated and compared with other members of the genus using photographs. Using a tiny bit of preserved tissue, we successfully amplified and sequenced one nuclear IRBP and a mitochondrial Cyt b gene in this rodent. Nuclear and mitochondrial gene Bayesian Inferred (BI) phylogenetic trees revealed it to be a murid, showing genetic affinities to the genus Millardia. Interestingly, the Cyt b based phylogeny shows clustering of our new sequence with two Millardia species, M. kathleenae and M. meltada in a distinct monophyletic clade. The IRBP based BI tree revealed it to be paraphyletic with respect to the species of the Millardia genus. Genetic distance estimation for both mitochondrial and nuclear genes also exhibited significant differences with the known Millardia species. Thus, the possibility of a new species of genus Millardia, or even a new genus in the family Muridae in the unexplored region of Central India cannot be ruled out.
https://doi.org/10.17087/jbnhs/2020/v117/143831

References

Agrawal, V.C. (2000): Taxonomic studies on Indian Muridae and Hystricidae (Mammalia: Rodentia). Records of the Zoological survey of India 180: 1–177.

Alroy, J. (1999): The fossil record of North American mammals: evidence for a Paleocene evolutionary radiation. Syst. Biol. 48: 107–118.

Ayala, F.J. (1975): Genetic differentiation during the speciation process. pp. l–78. In: Dobzhansky, T.,.1.K. Hecht and W.C. Steere (Eds): Evolutionary Biology, Vol. 8, Plenum Press, New York.

Barbosa, S., J. Pauperio, J.B. Searle & P.C. Alves (2012): Genetic identification of Iberian rodent species using both mitochondrial and nuclear loci: application to noninvasive sampling. Molecular Ecology Resources 13(1): 43–56. doi: 10.1111/1755-0998.12024.

Buckley, T.R., M. Cordeiro, D.C. Marshall & C. Simon (2006): Differentiating between hypotheses of lineage sorting and introgression in New Zealand alpine cicadas (Maoricicada Dugdale). Syst. Biol. 55: 411–425.

Corbet, G.B. & J.E. Hill (1992): The mammals of the Indomalayan Region. A systematic review Oxford University Press, Oxford, 488 pp.

Good, J.M., S. Hird, N. Reid, J. Demboski, S.J. Steppan, T.R. Martin Nims & J. Sullivan (2008): Ancient hybridization and mitochondrial capture between two species of chipmunks. Mol. Ecol. 17: 1313–1327.

Holder, M.T., J.A. Anderson & A.K. Holloway (2001): Difficulties in detecting hybridization. Syst. Biol. 50: 978–982.

Kay, R.F., J.G. Fleagle, T.R.T. Mitchell, M. Colbert, T. Bown & D.W. Powers (2008): The anatomy of Dolichocebus gaimanensis, a stem platyrrhine monkey from Argentina. Journal of Human Evolution 54: 323–382.

Kumar, S., G . Stecher & K . Tamura (2016): MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets.mMol. Biol. Evol. 33(7): 1870–1874. doi: 10.1093/molbev/msw054. Epub 2016 Mar 22.

Mishra, A.C. & V. Dhanda (1975): Review of the genus Millardia (Rodentia: Muridae), with description of a new species. Journal of Mammalogy 56: 76–80.

Molur, S., C. Srinivasulu, B. Srinivasulu, S. Walker, P.O. Nameer & L. Ravikumar (2005): Status of nonvolant small mammals: Conservation Assessment and Management Plan (C.A.M.P) workshop report. Zoo Outreach Organization/CBSG-South Asia., Coimbatore, India.

Nei, M. (1972): Genetic distance between populations. American Naturalist 106: 283–292.

Peters, J.L., Y. Zhuravlev, I. Fefelov, A. Logie & K.E. Omland (2007): Nuclear loci and coalescent methods support ancient hybridization as cause of mitochondrial paraphyly between gadwall and falcated duck (Anas spp.). Evolution 61: 1992–2006.

Pradhan, M.S., A.K. Mondal & A.M. Bhagwat (2005): On taxonomic status of Bandicota bengalensis lordi (Wroughton) and Bandicota maxima (Pradhan et al.): (Subfamily: Murinae; Family: Muridae; Order: Rodentia). Rec. zool. Surv. India 104 (Part 1–2): 85–90.

Pradhan, M.S. & S.S. Talmale (2012): Indian Mammals: Checklist with comments on Type Locality, distribution, conservation status, and taxonomy. Nature Books India, Kolkata. Pp. 1–488.

Ronquist, F., M. Teslenko, va n der Mark P., D. L. Ayres, A. Darling, S. Höhna, B. Larget, L. Liu, M.A. Suchard & J.P. Huelsenbeck (2012): MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space, Syst. Biol. 61: 539–542.

Saitou, N. & M. Nei (1987): The neighbor-joining method: a new method for reconstructing phylogenetic trees. Molecular Biology and Evolution 4(4): 406–425. https://doi.org/10.1093/oxfordjournals.molbev.a040454 .

Smith, F.A., A.G. Boyer, J.H. Brown, D.P. Costa, T. Dayan, S.K. Morgan Ernest, A.R. Evans, M. Fortelius, J.L. Gittleman, M.J. Hamilton, L.E. Harding, K. Lintulaakso, S.K. Lyons, C. McCain, J.G. Okie, J.J. Saarinen, R.M. Sibly, P.R. Stephens, J. Theodor & M.D. U hen (2010): The evolution of maximum body size of terrestrial mammals. Science 330: 1216–1219.

Talmale, S.S., Tilak, Rina & M.S. Pradhan (2013): Additional collection record of Sinhgarh rat, Millardia kondana Mishra and Dhanda from Sinhgarh Pune, India, Records of Zoological Survey of India 113 (Part-2): 189–191.

Wilson, D., R. Mittermeier & T. Lacher (2017): Family Muridae In: Handbook of the Mammals of the World, Vol. 7, Lynx Edicions, Barcelona.

Downloads

Download data is not yet available.